BehaviorAtlas Behavior · Software Suite

3D-AI Animal Behavior Analysis System · Software Suite

From multi-camera capture to 3D skeleton reconstruction, AI behavior recognition, and publication-ready visualization — one software stack for the full research workflow, multi-species and multi-user ready.

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Supported Species

One BehaviorAtlas architecture for rodents, primates, canines, pigs, avian models, and more — select a species to explore its software stack.

Software Functions

From multi-camera synchronized capture to markerless 3D-AI tracking, automated behavior outputs, multi-dimensional kinematics, and integrated visualization — the full locomotion analysis workflow.

Multi-camera Sync for High-quality Video

Multi-view synchronized capture with high-precision acquisition — stable, clear, complete video foundations for 3D reconstruction and behavior analysis.

Markerless 3D-AI Tracking

Markerless 3D-AI automatically identifies 16+ body keypoints and extracts 3D coordinate trajectories for fine-grained locomotion detection.

40 Behavior Classes — No Local Setup

Built-in standardized pipelines auto-generate 40 action-class outputs — no complex local environment setup, lower barrier, faster processing.

Multi-dimensional Kinematic Analysis

Computes speed, angles, spatial position, trajectories, gait cycles, and more — multi-dimensional analysis of limb phases and overall motor function.

Statistics & Visualization in One

Built-in group statistics and rich charts — trajectory plots, parameter distributions, heatmaps, and dimensionality reduction for fast comparison and interpretation.

Easy to Use — Multilingual & Flexible

Friendly UI with Chinese/English switching, project and sample metadata entry, adjustable treadmill speed, and support for diverse locomotion assay setups.

Software Matrix

Capture, Analyzer, and Explorer — acquisition, analysis, and visualization in one stack.

BehaviorAtlas Capture · Mice & Rats
Capture

4 cams

Camera sync

50×50

cm arena

Visible/IR modes, TTL event sync, multi-camera calibration, millimeter-level precision, one-click recording.

BehaviorAtlas Capture · Mice & Rats

Multi-camera acquisition software

BehaviorAtlas Analyzer · Mice & Rats
Analyze

16

Body keypoints

40+

Behavior modules

AI keypoint detection, 3D skeleton reconstruction, unsupervised behavior module decomposition — one-click pipeline.

BehaviorAtlas Analyzer · Mice & Rats

3D reconstruction & AI behavior recognition

BehaviorAtlas Explorer · Mice & Rats
Visualize

Spectrum

Temporal analysis

SCI

Grade export

Kinematics curves, heatmaps, behavior spectra, transition matrices — export and report generation.

BehaviorAtlas Explorer · Mice & Rats

Behavior spectrum & publication-ready charts

Analysis Workflow

Fine-grained mouse analysis — from multi-camera capture and calibration through 3D reconstruction, decomposition, and publication export in seven steps.

01

Calibration & Event Sync

4–5 visible/IR cameras with 50×50 cm arena calibration and TTL event markers.

Calibration & Event Sync
02

Multi-camera Sync Capture

Multi-channel visible/IR synchronized recording with TTL event markers and experiment metadata — high-quality raw video for downstream analysis.

Multi-camera Sync Capture
03

Multi-body Point Tracking

Pre-trained models track 16+ body keypoints with high-precision 2D trajectories for 3D reconstruction.

Multi-body Point Tracking
04

3D Reconstruction

Fuses multi-view tracking data with camera calibration to reconstruct 3D multi-body skeleton sequences with robust occlusion handling.

3D Reconstruction
05

Behavior Decomposition

Deep learning decomposes behavior into a pose–action–spectrum hierarchy, automatically identifying fine modules such as running, walking, jumping, climbing, standing, and exploration.

Behavior Decomposition
06

Action Clustering & Behavior Spectrum

Merges limb movement amplitude and speed into a complete behavior space via clustering, producing a final spectrum for group comparison and statistics.

Action Clustering & Behavior Spectrum
07

Data Analysis & Result Export

Generate publication-grade spectra, heatmaps, and transition matrices; auto-clip behavior segments and export figures and reports in one click.

Data Analysis & Result Export

Analysis Results

Mouse behavior analysis — from kinematics curves to behavior spectra and transition matrices for high-impact publications.

3D Trajectories & Keypoint Dynamics

01

3D Trajectories & Keypoint Dynamics

Trajectory 16 keypoints XYZ dynamics

Spatial trajectories and keypoint layouts in the left and lower views; upper-right curves show X, Y, and Z dynamics for 16 body parts — visualize activity range, movement paths, and limb motion patterns as a foundation for behavior and kinematic quantification.

Output Structure & File Management

02

Output Structure & File Management

Organized Raw data Project files

Core folders — 3Dskeleton, BeAOutputs, Figures, VideoSeg — organize 3D skeleton data, behavior decomposition, charts, and motion clips. From raw .c3d and .csv inputs through behavior labels, clustering, sample skeletons, and video segments to a complete project ready for analysis, presentation, and audit — clear hierarchy for traceability and reproducibility.

Single-Sample Overview & Behavioral Analysis

03

Single-Sample Overview & Behavioral Analysis

Multi-camera 3D skeleton Timeline

BehaviorAtlas® Explorer brings single-sample analysis into one view — multi-camera video preview, 3D skeleton reconstruction, motion segment clustering, kinematic parameter curves, and behavior timelines. Researchers can synchronously review raw video, 3D trajectories, keypoint dynamics, and behavior segmentation to perform quality checks, motion assessment, and preliminary pattern analysis. The layout keeps information focused and traceable from raw capture through phenotypic outcomes.

Rich Visualization & Analysis Outputs

04

Rich Visualization & Analysis Outputs

Multi-dimensional HD export Data export

Multi-dimensional visualization spans single-sample QC, 3D skeleton reconstruction, trajectories, spatial heatmaps, kinematic statistics, behavior timelines, action proportions, clustering, dimensionality reduction, and state-transition analysis. Every output supports image editing and high-resolution export, plus raw data and statistics export for publication figures, verification, secondary analysis, and reporting.

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Book an online demo — experience the full Capture · Analyzer · Explorer workflow with tailored protocol advice.

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